[PyMOL] pymol crashed reading any structure file

2015-12-13 Thread Albert
Dear: I've compiled pymol-1.8.0 under my Linux X64 OS. I found that Pymol can start by command: pymol without any complaints or erros. However, when I try to load a .pdb file into pymol, pymol always failed with following messages:

Re: [PyMOL] Drawing grid of cubes

2015-12-13 Thread Tsjerk Wassenaar
Hi Damien, The following code bins particles and makes a grid of pseudoatoms, putting the count in the b-factor field and as radius. You should be able to convert these to cubes using the script (but doing scaled spheres, and coloring according to count is nifty too). import numpy def griddify(s