Re: [PyMOL] pdbml

2015-10-23 Thread John Berrisford
Dear Authur As the PDB format is not suitable for structures with over 99,999 atom lines or over 62 chains we only distribute these structures in both mmCIF and PDBML formats. See: http://www.wwpdb.org/news/news?year=2014#10-December-2014 We (PDBe) have been using mmCIF format in pymol for nu

Re: [PyMOL] pdbml

2015-10-23 Thread Arthur Zalevsky
Hi John, Yeah, i know about limitations of PDB format. I've missed the news you mentioned so it was a kind of surprise when i found ribosome pdbs superseded by merged pdbml. So basically j'm just a bit outdated and updating of once established pipelines is always a bit frustrating. Thanks agai

[PyMOL] CGO segmentation fault

2015-10-23 Thread Tsjerk Wassenaar
Hi Thomas, Not sure if I ever reported this already, but when cmd.load_cgo gets an argument that is not a list of values, Pymol (1.7.4.0 incentive, Mac) halts with a segmentation fault. I know it's my bad for feeding a still nested list, but a segmentation fault is a harsh way of complaining :) C

Re: [PyMOL] CGO segmentation fault

2015-10-23 Thread Thomas Holder
Hi Tsjerk, Thanks for reporting, we'll look into that. Cheers, Thomas On 23 Oct 2015, at 05:14, Tsjerk Wassenaar wrote: > Hi Thomas, > > Not sure if I ever reported this already, but when cmd.load_cgo gets an > argument that is not a list of values, Pymol (1.7.4.0 incentive, Mac) halts >