Re: [PyMOL] how to measure the distance of 2 hydrophobic residues

Hi Smith - This won't tell you anything about the hydrophobic interaction itself, but if you want to get the distance between the average positions (like center of mass, but without mass) of two groups of atoms to use as an "approximate" distance between the two residues/sidechains/etc., you ca

Re: [PyMOL] how to measure the angle between two protein complexes

Hi Yeping - To calculate such an angle, you will need two vectors, which you can create with some pseudoatoms and the orient command. Before you start, you should create named selections for the ring and