Hi Brenton
The script seems to work for me
A couple of questions:
-
Why aren’t you installing PyMOL from the repository?
sudo apt-get install pymol
-
Are you sure that the name of the pdb file is correct? (remember that
names are case sensitive)
Cheers,
Osvaldo
On Fri, Jun
Hi All,
I’m looking for a primer on how to manipulate and render Cryo-EM structures in
PyMOL. Does anyone have any suggestions where I can start?
As a test I downloaded a structure and applied a map to it, but I was only able
to give it one color. How do you get multiple colors, like this examp
Hi Joel,
this is a picking bug with measurement labels, we fixed it this week. Please
install the latest build (1.7.6.2, from http://pymol.org/download).
Thanks,
Thomas
On 04 Jun 2015, at 23:57, Joel Tyndall wrote:
> Hi all,
>
> I’m on a PC (windows 7) with the latest incentive 1.7.6.0 ve
Hi Brenton,
regarding "SVN download doesn't color by secondary structure":
If you want to use the SVN version, then please always have a look at the top
of the ChangeLog, or follow SVN commit messages. In the latest commit I changed
the default of the "ignore_case" setting to "off". This mean t
Hi all,
I'm a beginner at PyMol, but I'm wondering if a batch action like this
would be possible: If I have a bunch of .sdf and .pdb files in a folder,
and I want to apply a specific "look" to all of them (I've written the
parameters regarding light, field of view etc.), is it possible to batch
pr
Hi Praz,
When I want to process several files, do complex or repetitive tasks I
prefer to write a Python script and access the PyMOL functions using the
PyMOL API, as in the code below.
This example will upload all the pdb files in the folder where the script
is located, one file at a time, save
