[PyMOL] Displaying covalent bonds between amino acids (within protein) and ligand

Hi, In the structure that goes by the PDB ID 1PWC (RCSB PDB , PDBe , download link for bio assembly 1 , which I am using) PNM (op

Re: [PyMOL] Displaying covalent bonds between amino acids (within protein) and ligand

Hi Brenton, You will also need to show the sticks for the sidechain of residue 62: fetch 1pwc hide show cartoon show sticks, r. pnm show sticks, resi 62 and not name c+n+o Cheers, Tsjerk On Sat, Apr 4, 2015 at 3:52 PM, Brenton Horne wrote: > Hi, > > In the structure that goes by the PDB ID

[PyMOL] Reminder: CCP4 crystallographic summer school in USA, at APS, June 16-23

Dear Colleagues, We are sending out this friendly reminder that the deadline for the annual CCP4/APS Crystallographic Summer School, to be held June 16-24at advanced Photon Source, is fast approaching. If you would like your application to be considered, please submit it no later than April 16.

[PyMOL] Fwd: Displaying covalent bonds between amino acids (within protein) and ligand

Oh, and always use 'reply-to-all' if this is follow-up on a post. Cheers, Tsjerk -- Forwarded message -- From: Tsjerk Wassenaar Date: Sat, Apr 4, 2015 at 9:14 PM Subject: Re: [PyMOL] Displaying covalent bonds between amino acids (within protein) and ligand To: Brenton Horne H

[PyMOL] Zoom animation

Hi, I'd like to create a set of transparent PNG frames, with each frame being more and more zoomed in on the PNM-ser62 complex found within the PDB structure 1PWC. This is the code I have so far: set ray_opaque_background, 0 png Image0001.png, width= 2000, height= 1162, dpi=500, ray