[PyMOL] Is it possible to set the number of frames in a movie?

Hi, I've just started using PyMOL and although I rather like the movie-making function I would like to know if it is possible to set the number of frames and the exact angle between frames (i.e., I usually rotate about the y axis in these movies I capture). Please keep in mind I am a noob whe

Re: [PyMOL] plugin errors in pymol 1.7.2.1

Hi Hena, Regarding stereo: Anaglyph and side-by-side will work on any monitor. Quadbuffered and Zalman (byrow) methods are hardware dependant. Nvidia supports quadbuffered only with Quadro cards, not with GeForce. Switch between stereo modes with the "Display > Stereo Mode" menu or with the com

Re: [PyMOL] CGOs

OK. I will look at the PyMOL code if I need to. For instance: LINE has eight parameters. I don't know what the first two are. LINE ? ? x1 y1 z1 x2 y2 z2 On Sun, Dec 21, 2014 at 3:17 PM, Tsjerk Wassenaar wrote: > Hi Bob, > > Unfortunately, there is little documentation on CGO objects. You

Re: [PyMOL] CGOs

where are you getting this from? I don’t see a LINE command in pymol/modules/cgo.py -David > On Dec 22, 2014, at 11:40 AM, Robert Hanson wrote: > > OK. I will look at the PyMOL code if I need to. For instance: > > LINE has eight parameters. I don't know what the first two are. > > LINE ?

Re: [PyMOL] Is it possible to set the number of frames in a movie?

Hi Brenton, Have you tried using the EMovie-plugin ? Cheers, Osvaldo. On Mon, Dec 22, 2014 at 10:47 AM, Brenton Horne wrote: Hi, > > I've just started using PyMOL and although I rather like the movie-making > function I would like to know if it is p

Re: [PyMOL] CGOs

OK, that explains it. I think I made that one up. It was a while ago that I worked on this. :) I see the list at https://github.com/speleo3/pymol/blob/master/modules/pymol/cgo.py Thanks​, David. Bob -- Dive into the World

Re: [PyMOL] CGOs

I am not sure where the LINE command is coming in, but when I have worked with CGO I have done "BEGIN LINES COLOR cr cg cb VERTEX x1 y1 z1 VERTEX x2 y2 z2". On Mon Dec 22 2014 at 8:56:29 AM David Hall wrote: > where are you getting this from? I don’t see a LINE command in > pymol/modules/cgo.py

Re: [PyMOL] CGOs

Hi Bob, a while back I attempted to document the CGO capabilities, but never finished it. Attached is a bit of a write-up from that attempt. Hope it helps somewhat. Carsten From: Robert Hanson [mailto:hans...@stolaf.edu] Sent: Monday, December 22, 2014 12:27 PM To: David Hall Cc: pymol-users S

Re: [PyMOL] CGOs

Great. Thanks very much. The ones perhaps missing there are: #define CGO_INDENT 0x18 #define CGO_RESET_NORMAL 0x1E #define CGO_PICK_COLOR 0x1F And I think #define CGO_LIGHTING 0x0B50 may be an internal flag, not a CGO command.

[PyMOL] sulfated tyrosine's losing connection

Does anyone know why PyMoL renders the PDBs 3U2S and 3U4E without connecting backbone atoms at residue 100G and 100H? Are the bond distances for these two residue types not within the right parameters? SimpleViewer and JalView both bridge this connection. Thanks, Jordan