Re: [PyMOL] PyMOL performance improvement

2014-11-07 Thread Folmer Fredslund
Dear Annalisa, Perhaps you should consider installing the nvidia driver instead of using nouveau? Venlig hilsen Folmer Fredslund Den 07/11/2014 04.07 skrev "Annalisa Arcella" : > Hi All, > I have installed PyMol by terminal > > sudo apt-get install pymol > > on my Ubuntu14.04 but it is very slow

Re: [PyMOL] PyMOL performance improvement

2014-11-07 Thread Annalisa Arcella
Thanks a lot! I have just installed nvidia driver but pymol still recognize Gallium when open. How can I set the new driver on pymol in order to use it when I open it? Thanks again, On Fri, Nov 7, 2014 at 7:31 AM, Folmer Fredslund wrote: > Dear Annalisa, > > Perhaps you should consider insta

Re: [PyMOL] PyMOL performance improvement - SOLVED

2014-11-07 Thread Annalisa Arcella
After to install NVIDIA driver I simply restarted the pc and now Pymol works great! Thanks a lot! Annalisa On Fri, Nov 7, 2014 at 10:56 AM, Annalisa Arcella < annalisa.arce...@gmail.com> wrote: > Thanks a lot! > > I have just installed nvidia driver but pymol still recognize Gallium > when ope

Re: [PyMOL] PyMOL performance improvement - SOLVED

2014-11-07 Thread Annalisa Arcella
Hi all, Here is how I solved my problem of very slow pymol on UBUNTU14.04 On Fri, Nov 7, 2014 at 11:18 AM, Annalisa Arcella < annalisa.arce...@gmail.com> wrote: > I install > ​ed​ > NVIDIA > ​ graphic as follow​ > > > sudo apt-get install nvidia-304 > sudo apt-get install nvidia-304-updates > >

[PyMOL] Automatic detection and removing of steric problems

2014-11-07 Thread James Starlight
Dear PyMol users! I'm writing of some automatic script aimed on the embedding of the receptors into the membrane consisted of the pre-equilibrated lipids as well as hole for the protein. The main issue that some of the receptors consist of the bulky PHE or TRP side chains on their surface which ar