[PyMOL] Can not open APBS plugin in PyMol 1.7.2.0 (Open Source, Fink, OS X 10.10)

2014-10-22 Thread Xiaoguang Xue
Hi, All I can't open apbs plugin in pymol 1.7.2.0 (installed by Fink on OS X 10.10). I got the following error. Error: 2 Exception in Tk callback Function: at 0x110cde320> (type: ) Args: () Traceback (innermost last): File "/sw/lib/python2.7/site-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", li

Re: [PyMOL] Can not open APBS plugin in PyMol 1.7.2.0 (Open Source, Fink, OS X 10.10)

2014-10-22 Thread Xiaoguang Xue
This is the system info Also include the following system information: Package manager version: 0.38.1 Distribution version: selfupdate-rsync Sun Oct 22 10:00:35 2014, 10.10, x86_64 Trees: local/main stable/main stable/crypto Xcode.app: 6.1.0 Xcode command-line tools: 6.1.0.0.1.1413057044 Ma

Re: [PyMOL] How to draw clashes in pymol -> integration/plug-in of Molprobity in PyMol???

2014-10-22 Thread Tim Schulte
Hej everybody, my question is related to this post. I am just analyzing a structure and really like the way Molprobity puts out information about hydrogen bonds and vdW contacts and so on. It is also possible to take advantage of this analysis in phenix during/after refinement, because Coot pr

Re: [PyMOL] How to draw clashes in pymol -> integration/plug-in of Molprobity in PyMol???

2014-10-22 Thread Schubert, Carsten [JRDUS]
Tim: Good suggestion, I would second this effort. Thanks for raising the issue Cheers, Carsten From: Tim Schulte [mailto:tim.schu...@ki.se] Sent: Wednesday, October 22, 2014 2:11 PM To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] How to draw clashes in pymol -> integration/plug-in of