[PyMOL] colour surface meshes

2014-10-13 Thread David Pattinson
Hi all Is pymol able to save surface mesh files (.obj or .wrl) which include face colours? Many thanks David ___ David J. Pattinson PhD Student in the Centre for Pathogen Evolution Department of Zoology University of Cambridge dj...@cam.ac.uk

Re: [PyMOL] colour surface meshes

2014-10-13 Thread Sampson, Jared
Hi David - Yes, indeed, PyMOL can save VRML2 (.wrl) files, although it outputs vertex colors rather than face colors. Cheers, Jared -- Jared Sampson Xiangpeng Kong Lab NYU Langone Medical Center http://kong.med.nyu.edu/ On Oct 13, 2014, at 11:18 AM, David Pattinson mailto:dj...@cam.ac.uk

Re: [PyMOL] Render dot surface

2014-10-13 Thread Thomas Holder
Hi Colin, thanks for the bug report, I can confirm that ray tracing dots representation is broken. Unfortunately, there is no workaround (other than going back to PyMOL 1.7.0). Fortunately, this is a quick fix and we will post updated installers soon! Cheers, Thomas On 10 Oct 2014, at 04:28

Re: [PyMOL] Pymol Mobile viewer?

2014-10-13 Thread Thomas Holder
Hi Doug, to answer your question, Schrödinger is not working on an Android version of PyMOL and we don't have plans to start this any time soon. But we are happy to collect feedback that will help us prioritize an Android port. For those who have an iPad: What do you use Mobile PyMOL for? How o

[PyMOL] color a polypeptide continuously

2014-10-13 Thread sunyeping
Dear pymol user,Could you tell me how to color a polypeptide continuously from N- to C-terminal by continuous spectrum such as red to blue? Yeping Sun Institute of Microbiology, Chinese Academy of Sciences -- Comprehensive

Re: [PyMOL] color a polypeptide continuously

2014-10-13 Thread T. Nakane
Hi, In GUI, [Color]-[spectrum]-[rainbow]. From command line, util.chainbow("name") Best regards, Takanori Nakane On 2014-10-14 13:55, sunyeping wrote: > Dear pymol user, > > Could you tell me how to color a polypeptide continuously from N- to > C-terminal by continuous spectrum such as red

Re: [PyMOL] Pymol Mobile viewer?

2014-10-13 Thread Douglas Houston
Hi Thomas, Although I have no use for the iPad version I can answer your questions as if for an Android version. In my experience most people have quite a '2D' approach to molecular design, due to a lifetime of learning via lectures, journals and textbooks. Very often I find myself wishing