Re: [PyMOL] Access to pymol commands from the terminal

Hey, I've occasionally deleted my profit script which do superimposition automatically so I'll be very thankful if someone remind me profit input script syntax for my case profit -h -f script.txt ref.pdb tar.pdb should do actual superimposition where in script.txt; ATOMS CA ZONE 2-290:2-290 FIT

[PyMOL] Pymol residue number disappear?

Hi all, I have a very weird problem: every time when I show sequence in pymol, the residue number just disappears. The changes I made recently before I spotted this problem are eMovie plug-in and freemol installation (in order to save mpg movies). I am using pymol 1.6.0.0 on a Debian Wheezy machin

[PyMOL] Improve scene command?

On the wiki page for scene, it states: DEVELOPMENT TO DO Add support for save/restore of a certain global and object-and-state specific settings, such as: state, surface_color, ribbon_color, stick_color, transparency, sphere_transparency, etc. This would probably best be done by defining a cl

Re: [PyMOL] naming of chain id

Hi Yeping Sun, Did you solve your problem? According to http://www.wwpdb.org/procedure.html#toc_4 " What is the maximum number of chain IDs in a file? Up to 62 chains can be included in the PDB entry. Upper case letters and numbers (0-9) should be used first for chain IDs. Lower case letters sho