I guess I've passed superimpoition- it works great - with the one
exception- after fitting to ref.pdb the last colum (consisted of the atom
names like C, N, O etc) from the each fitted mobile.pdb has been removed. I
need to keep this column on the resulted pdb because I'll use this pdb as
the initi
Dear, PyMol-Gromacs experts,
I used to use PyMol Dynamics plugin to make some MDs.
It makes me more than sad I always get notes like:
-
NOTE 1 [file em.mdp]:
You are using a plain Coulomb cut-off, which might produce artifacts.
You might want to consider usi
Hi James -
What version of PyMOL are you using? For me, using Open Source PyMOL 1.7.2.0,
a typical PDB file I tested ends up with more information in that column, not
less, after saving from PyMOL:
Before:
ATOM 1312 NH1 ARG A 198 0.544 14.093 19.655 1.00 34.61 N
After:
A
Thanks you Jared.
I will try CCP4 and get back to you.
Regards,
Bhumika.
On Wed, Sep 10, 2014 at 12:20 AM, Sampson, Jared
wrote:
> Hi Bhumika -
>
> Have a look at the CCP4 program NCONT:
> http://www.ccp4.ac.uk/html/ncont.html.
>
> You can run it within the CCP4 GUI or from the command line
Dear all,
I have a problem with adding morph into eMovie. I made a morph between two
states using other softwares and load it into pymol by "load previously
created morph". But when I tried to add morph to eMovie, I got the
following error message:
Error: 2
Exception in Tk callback
Function: >
Hi all,
I seem to be losing the use of the wheel for the slab adjustment. To be honest
I find it difficult to replicate or work out what I do to turn it off (or on).
Anyone else seen this before?
Windows 7, pymol 1.7.2.0 (64 bit)
J
_
Joel Tyndall, PhD
Asso
Yes, I've noted that too. Somewhat frustrating.
Windows 7, pymol 1.6.0.0 (64 bit)
(yes, I know I need to update)
On 9/11/2014 10:42 PM, Joel Tyndall wrote:
> Hi all,
>
> I seem to be losing the use of the wheel for the slab adjustment. To be
> honest I find it difficult to replicate or work out
