Hello everyone,
I wrote a python script where pymol performs some color changes, ray tracing
and image export.
The script works perfectly if I enable the GUI, however if I load pymol without
the GUI (-c flag) I receive a segmentation fault error.
I found out that this issue is resolved by com
I would like to upgrade to Pymol 1.6 on my windows 7 64 bit laptop. Right now I
have Pymol 1.3 opensource. I have a many session files (.pse) that I have made
on PyMol 1.3, and want to make sure that upgrading will not be a problem. Can
I uninstall Pymol 1.3, then install Python 2.7 and Pymol 1
Hi Ricardo,
you probably want to do this, without calling the ray command:
cmd.png("image.png", 640, 640, dpi=300, ray=1)
Also, your ray command sets antialias=300 and angle=-1, which I guess was not
your intention. I'm not getting a segmentation fault with the latest SVN code
using your comma
Hi Lapolla,
Yes, you can keep your pymol v1.3 and v1.6. Just make sure that they have
different names. You will also be able to open your old pse files.
Cheers,
Marcelo
On Jan 14, 2014, at 12:18 PM, Lapolla, Suzanne M (HSC)
wrote:
> I would like to upgrade to Pymol 1.6 on my windows 7 64 bit
While you are updating, you might as well update to the very recently
released version, 1.7.
Engin
On 1/14/14, 3:07 PM, Marcelo Marcet wrote:
> Hi Lapolla,
>
> Yes, you can keep your pymol v1.3 and v1.6. Just make sure that they have
> different names. You will also be able to open your old pse
I thought that 1.7 was not free--that you had to pay for it. Not true? If 1.7
is free, could you give me a link? Thank you.
From: Engin Özkan [eoz...@stanford.edu]
Sent: Tuesday, January 14, 2014 3:10 PM
To: pymol-users@lists.sourceforge.net
Subject: Re: [
Hi Lapolla,
The PyMOL source is available here:
http://sourceforge.net/projects/pymol/
Hope this helps,
Folmer
2014/1/14 Lapolla, Suzanne M (HSC)
> I thought that 1.7 was not free--that you had to pay for it. Not true? If
> 1.7 is free, could you give me a link? Thank you.
>
Greetings,
We are happy to announce the release of PyMOL v1.7.0.0! Official
PyMOL sponsors can download ready-to-use installers from
http://pymol.org/dsc/ip . The open-source code has been pushed to
sourceforge svn (revision 4060) and a downloadable bz2 source file is
also available from http://sf
Dear PyMOL Users,
I am writing a python script that utilizes the "cmd.find_pairs" and
"cmd.distance" functions of the PyMOL API, in order to identify hydrogen
bonds in a PQR file and calculate their properties.
Since crystal structures rarely contain hydrogens, PyMOL guesses the
position of hydrog
