Hi Carlos and Jared,
thanks for your answers!
Jared, your method is quick to do, but the ribbon follows every
turn of a helix, which I wanted do avoid.
Carlos, your method did what I wanted. I commented
out amino acids which c-alphas I did not want to be included,
and ran the script zero_residues.
James,
PyMOL can use multiple CPU cores to create ray-traced images. PyMOL
does not ray trace on the GPU. If you enable use_shaders then you're
getting graphics that are as good as ray tracing but without shadows
or antialiasing. So, if that's okay for you, then calculate your
viewport size, disab
Hi,
I use Pymol on a Windows 8 based computer, the software works well but I
cannot install plugins. Does anyone have a similar problem with Windows 8?
Thanks
Best regards,
Giuseppe Ermondi
Prof. Giuseppe Ermondi
Dipartimento di Biotecnologie Molecolari e Scienza della
Hi Giuseppe,
plugin installation should work fine on Windows 8. Which version of PyMOL do
you use? Since 1.5.0.5 plugins can be installed in the user's home folder.
Older versions of PyMOL only did system level installation of plugins, which
required admin write permissions.
Cheers,
Thomas
Hi Jerome,
I think the simple reason is that nobody ever wrote a PDBML parser for PyMOL.
Is that a good reason?
Cheers,
Thomas
On 28 Nov 2013, at 13:21, Jerome BENOIT wrote:
> Hello List,
>
> is there any good reason why PyMOL can not read PDBML data files ?
>
> Cheers,
> Jerome
-
Hello everyone,
My apologies in advance for bringing up this often gone-over topic, but this is
likely the only place I can get an up-to-date answer on the topic. I'm looking
to replace an old Zalman monitor with something new for a Mac platform. I was
reading about the 27" passive 3D monito
Hi Simon -
Glad you figured out a method that worked for you.
However, I'm wondering why you ended up with "un-smoothed" helices using the
`cartoon_smooth_loops` method. Are you sure you typed the last two commands in
my example correctly (`alter` and `rebuild`)? I'm getting a single, relati
