Dear Pymol Users!
In the latest 3.0 releases of the CAVER plugin lack the source path for the
caver.jar launch file. Could you tell me how I could define this path
manually from pymol shell? I've try to make calculations with thus plugin
having Caver 3.0 dir in the work folder but obtained error
Hi Christian,
set defer_builds_mode to 3, this will prevent caching the geometry for all
states.
http://pymolwiki.org/index.php/Defer_builds_mode
Cheers,
Thomas
On 09 Nov 2013, at 13:58, Christian Becke wrote:
> Dear pymol users,
>
> I'm trying to create a movie, using lsqman and pymol, o
Hi Simon -
I don't think you need to do any deleting of atoms at all--there are a few
settings that will be helpful here. Here's how I would do what I think you're
asking for:
# load and set basic representation
load structure.pdb
as cartoon
# create the smooth version
create smooth, structu
This issue have been solved. Caver works fine. Does anyone tried to include
path information obtained by caver to the NAMD steered md simulation? I'm
looking for the protocol for guiding namd forces along the direction
obtaned from CAVER.
James
2013/11/15 James Starlight
> Dear Pymol Users!
>
