Re: [PyMOL] discrepancy between python and commandline script

Hi, I've continued to investigate and have gotten even more confused. This script: from numpy import * import sys cmd.delete("all") cmd.load( "../4lzt_quasi.pdb", "full") cmd.create("anew", "full", 1, 1) print "First 3 shifts: ", nm[0:3], "\n" cmd.alter_state(1,"anew" , "

[PyMOL] alignment of metal coordination

Hi, Is it possible to align two structure based on metal coordination or metal-coordinating residues? What is good way to do it?I appreciate your guidance. ThanksSDY -- November W