Re: [PyMOL] Setting atom properties

2013-08-27 Thread Thomas Holder
Hi Michael, this is exactly what the new arbitrary atom properties are intended for, very nice. To answer your questions: The context menu will list all property names which are found on the first atom of the selection. Selecting by those properties is not supported yet, but hopefully soon. Che

[PyMOL] Basic Pymol/ Python syntax question

2013-08-27 Thread James Rutley
Hi, This is a fairly basic question about syntax. How does one: as surface the protein and pseudoatoms in the short script below? Moreover, and work with the Lysine amines rather than the alpha carbons? # for_gnp.py # fetch a protein and create whole phage cmd.fetch("1ifp", type="pdb1", multiple