Hi Yeping,
unfortunately, the caver plugin doesn't take a selection expression, but
only selection names. Regarding your selection expression, you miss the
"name" operator. So this should work:
PyMOL> select startsele, chain A and resid 21 and name CA
In Caver: "Specify selection: startsele"
Ho
Hi Gianluigi,
I can only reproduce your problem with retain_order=1, not with
retain_order=0 (which is the default). Could it be that in your pymolrc,
you do "set retain_order, 1"?
I don't think there is a difference between 1.6 and previous versions.
Cheers,
Thomas
Gianluigi Caltabiano wrote
Hi Gianluigi,
PyMOL might find more pymolrc files than you are aware of. Just to be
sure, try this to get a hint:
PyMOL> print invocation.options.deferred
Also, check which plugins are installed and eventually disable them.
Cheers,
Thomas
Gianluigi Caltabiano wrote, On 07/23/13 10:44:
> Hi T
Dear all,
I'm installing PyMOL from svn on a RHEL 6.2 machine. This has always
worked. Today, I get an "command 'gcc' failed with exit status 1" error
(see below).
Any suggestions? Is there something amiss with the source?
Thanks.
Andreas
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -
Dear all,
following up on my previous post, pymol-v1.6.0.0.tar.bz2 from
http://sourceforge.net/projects/pymol/ compiles just fine on my machine.
It's the most recent source from svn that doesn't.
Andreas
--
Andreas Förster
Crystallization and Xray Facility Mana
Hi Andreas,
I recently made a small change regarding numpy support. Can you please
send me the output of the following command:
ls /usr/lib64/python2.6/site-packages/numpy/core/include/numpy
Meanwhile, just disable numpy support by removing the try/except block
in setup.py line 221.
Thanks,
T
numpy issue fixed in svn r4036.
Cheers,
Thomas
Thomas Holder wrote, On 07/23/13 11:18:
> Hi Andreas,
>
> I recently made a small change regarding numpy support. Can you please
> send me the output of the following command:
>
> ls /usr/lib64/python2.6/site-packages/numpy/core/include/numpy
>
Hello,
I'm using MacPymol 1.5.0.4
When I save a ray traced .PNG file with set ray_opaque_background, 0 It does
gives me a transparent background when I put the picture into other apps, e.g.
Powerpoint. However, when I save it as a .mov file, I can see that pymol is
trying for a transparent bac
