[PyMOL] Stereo (quad-buffered) and fixed object (Sequence, Sidebar) are suboptimal

Hi, Static objects like the sidebar and the sequence are only rendered for one eye. This results in some unpleasant optical effects due to one eye seeing different things as the other when having stereo switched on. Is it possible to render those objects for both eyes? Thanks Justin -- Justin

Re: [PyMOL] Creating coloured and transparent polyhedra

Hey :) Nice summary... There is also the keyword ALPHA for setting the cgo transparency, allowing per element control. Just set ALPHA, value, before the element. Cheers, Tsjerk On Jul 14, 2013 10:28 PM, "Schubert, Carsten [JRDUS]" wrote: Hi Timo, That is best approached with CGO objects. Y

Re: [PyMOL] Stereo (quad-buffered) and fixed object (Sequence, Sidebar) are suboptimal

Hi Justin, we fixed this in sourceforge SVN today. Please recompile and check if it works for you. Thanks. Cheers, Thomas Justin Lecher wrote, On 07/15/13 13:32: > Hi, > > Static objects like the sidebar and the sequence are only rendered for > one eye. This results in some unpleasant optical

[PyMOL] Graphically attaching particles to proteins

Hi, I wish to graphically attach nano-sized particles to bacteriophages (proteins from the protein database), to visually gauge which surface area is covered by the nano-sized particle. Thus, wondered how to go about doing this, i.e. is there a script, that already does something along these l

Re: [PyMOL] Creating coloured and transparent polyhedra

Hey Tsjerk, Good to know, I missed that feature. Wonder what else is hidden… Cheers, Carsten From: Tsjerk Wassenaar [mailto:tsje...@gmail.com] Sent: Monday, July 15, 2013 11:42 AM To: Schubert, Carsten [JRDUS] Cc: pymol-users@lists.sourceforge.net; Timo Stein Subject: Re: [PyMOL] Creating colou

[PyMOL] Reducing the surface rendering load for JSmol export

I am interested in displaying PyMOL session files using JSmol http://sourceforge.net/projects/jsmol/ Basically this works but some of the session files have high resolution surfaces which put a tremendous strain on JSmol/browser when they are displayed. I am new to PyMOL and cannot see how t

Re: [PyMOL] Stereo (quad-buffered) and fixed object (Sequence, Sidebar) are suboptimal

On 15/07/13 18:56, Thomas Holder wrote: > Hi Justin, > > we fixed this in sourceforge SVN today. Please recompile and check if it > works for you. Thanks. > > Cheers, > Thomas Thanks Thomas, works perfectly now! Cheers, Justin -- Justin Lecher Institute of Complex Systems ICS-6 Structural