Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Michael Banck
Hi, On Sun, Mar 24, 2013 at 11:02:08AM +0100, Thomas Holder wrote: > The pre-release version of PyMOL 1.6 has been pushed to the open > source repository on SourceForge. Besides several minor fixes and > improvements, this version should complete the transition to > shader-based rendering for all

Re: [PyMOL] Mesh Cavity Mode?

2013-03-25 Thread Sampson, Jared
Hi Thomas - Thanks! That's exactly what I wanted. Cheers, Jared -- Jared Sampson Xiangpeng Kong Lab NYU Langone Medical Center Old Public Health Building, Room 610 341 East 25th Street New York, NY 10016 212-263-7898 http://kong.med.nyu.edu/ On Mar 23, 2013, at 5:31 AM, Thomas Holder mailto:

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Christoph Gohlke
On 3/24/2013 3:02 AM, Thomas Holder wrote: Dear PyMOL users, The pre-release version of PyMOL 1.6 has been pushed to the open source repository on SourceForge. Besides several minor fixes and improvements, this version should complete the transition to shader-based rendering for all on-screen

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Stephen P. Molnar
On Sun, 24 Mar 2013 11:02:08 +0100 Thomas Holder wrote: > Dear PyMOL users, > > The pre-release version of PyMOL 1.6 has been pushed to the open > source repository on SourceForge. Besides several minor fixes and > improvements, this version should complete the transition to > shader-based rende

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Michael Banck
Hi Stephen, On Mon, Mar 25, 2013 at 01:33:16PM -0400, Stephen P. Molnar wrote: > On Sun, 24 Mar 2013 11:02:08 +0100 > Thomas Holder wrote: > > The pre-release version of PyMOL 1.6 has been pushed to the open > > source repository on SourceForge. Besides several minor fixes and > > improvements, t

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Stephen P. Molnar
On Mon, 25 Mar 2013 18:47:27 +0100 Michael Banck wrote: > Hi Stephen, > > On Mon, Mar 25, 2013 at 01:33:16PM -0400, Stephen P. Molnar wrote: > > On Sun, 24 Mar 2013 11:02:08 +0100 > > Thomas Holder wrote: > > > The pre-release version of PyMOL 1.6 has been pushed to the open > > > source reposi

[PyMOL] Color changes during a morph

2013-03-25 Thread Max NANAO
Hi All, Can anyone tell me how I might change the colors of a specific selection during the course of a rigimol generated morph? I would like one domain to go from purple to green, and have so far been unable to figure out how to do it. I tried coloring the different start/final states before

Re: [PyMOL] Color changes during a morph

2013-03-25 Thread Thomas Holder
Hi Max, you use a named color "newcolor" and change it's values at each iteration, but all states refer to this same color. Before I show you how to fix your script, could you give "spectrum_states" from the PyMOLWiki a try? It's a script which does exactly what you want: http://pymolwiki.org/ind

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Thomas Holder
Hi Christoph, thanks a lot for the patches. Regarding your suggestion for pymol.bat: I guess this will not work if you install with a custom prefix, since you make assumptions where to find pythonw.exe and the pymol module. I suggest to discuss this off-list, since it's quite specific. Cheers,