The suspension of undo doesn't have any effect on my accumulation of GB when
working with Hybrid PyMol...
Gianluigi
Da: Thomas Holder
A: pymol-users@lists.sourceforge.net
Inviato: Venerdì 21 Dicembre 2012 17:31
Oggetto: Re: [PyMOL] Memory not released after
Hi All,
I've been having a bit of trouble recently with the renumber script. I have
a pdb file that I'm trying to renumber, but unlike the other times I've
used it, it is renumbering incorrectly. The numbers are usually spaced out
5 residues apart, but I have one number right near the beginning th
Does it have to be a pymol script. Renumbering pdbs is the bread and butter of
biopython pdb module:
#!/blue/meilerlab/apps/Linux2/x86_64/bin/python2.5
import sys
from Bio.PDB import *
from optparse import OptionParser
import warnings
def main():
usage = "%prog input.pdb output.pdb"
parse
Hi Alex,
the renumber script only sets the residue number, it does not reorder
atoms internally. Just type
PyMOL> sort
to sort internally based on the new residue numbers.
See also:
http://pymolwiki.org/index.php/Sort
Cheers,
Thomas
Alex Truong wrote, On 01/21/13 19:21:
> Hi All,
>
> I've
Hi Jordan,
nice script, but it does not do the same like the renumber script from
the PyMOLWiki (http://pymolwiki.org/index.php/Renumber). Try this: set
all residue numbers to 1, the renumber script will not care because it
walks along the bonds and increases the count whenever it passes a
peptide