Dear PyMOL users
In a directory are PDB files of combined size equal to around 3MB. When
I load all files into PyMOL, I observe that the required RAM of PyMOL
(MacOS X 10.6) increases by roughly this amount.
When I delete all objects, the RAM requirement remains the same and when
I then reload a
Hi Martin,
Which version of PyMOL are you using?
Cheers,
-- Jason
On Fri, Dec 21, 2012 at 1:37 AM, Martin Hediger wrote:
> Dear PyMOL users
> In a directory are PDB files of combined size equal to around 3MB. When
> I load all files into PyMOL, I observe that the required RAM of PyMOL
> (MacOS
Hi Jason,
I'm using PyMOL 1.3.
Best regards
Martin
On 20.12.12 15:53, Jason Vertrees wrote:
> Hi Martin,
>
> Which version of PyMOL are you using?
>
> Cheers,
>
> -- Jason
>
> On Fri, Dec 21, 2012 at 1:37 AM, Martin Hediger wrote:
>> Dear PyMOL users
>> In a directory are PDB files of combine
Martin,
That sounds like a memory leak in v1.3. Can you try a newer version of
PyMOL and let us know if it still happens? We've fixed lots of bugs
since v1.3.
Also, is your script simply iterating over structures and deleting
them when done? You sure you're not missing a cleanup step somewhere?
(
I'll give it a try with the newer versions.
I just checked, and I believe I'm doing some cleaning up.
Sure, I posted the scripte on this pastebin:
http://pastebin.com/mC6Rs6wk
Sorry for the layout (all pretty in development). In production, the
script is invoked from the "frag" function.
Marti
Hi all,
I am trying to use PyMol version 1.2r1 to do one test but I always failed
to label my selection.
the command line I used is the following:
/usr/bin/pymol 1D5R.pdb 'show_as cartoon; spectrum b; sele t0, (resi
30); color red, selection=t0; show spheres, selection=t0; label t0, "test
me
