Hi Jordan,
morpheasy creates 30 states, which are mapped to 80 frames (forward
play, pause, backward play). If you have multiple conformations, do
morphs for each transition and join the results with "create".
Consider this example which morphs 1 -> 2 -> 3 -> 1
# align conformations
align conf
I was trying to figure out what to eat today so naturally I started looking for
PDB libraries
with food components. I was looking for garlic related chemicals when I came
across this,
http://molecules.gnu-darwin.org/
which seems to have many pdb files. My question I guess is, what does pymo
Hi Mike,
you can fetch molecular files from any web address with the "load"
command. Examples:
File type recognized from file extension:
PyMOL> load
http://molecules.gnu-darwin.org/html/00150001_00175000/153919/153919.pdb
File type given with "format" argument:
PyMOL> load
http://pubchem.ncbi.
> Date: Sun, 25 Nov 2012 23:49:26 +0100
> From: spel...@users.sourceforge.net
> To: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or
> related libraries
>
> Hi Mike,
>
> you can fetch molecula
fwiw, I did find mol2 format at this location which is just fine for my scripts,
http://zinc.docking.org/substance/1633229
Thanks.
> From: marchy...@hotmail.com
> To: spel...@users.sourceforge.net; pymol-users@lists.sourceforge.net
> Date: Sun, 25 Nov
