Hi Appu,
if I understand you correct then you have a structure with at least two
domains. If you align two conformations of that structure, one domain
does not get superposed nicely. Right?
The "psico" module provides the command "angle_between_domains", which
is what you are looking for I gue
Dear All,
I am trying to create a electron density map for the pdb file which is not
deposited in RCSB bank, however I do not find any option on
http://eds.bmc.uu.se/eds/. Is there any way to get density map for the pdb
files which are not deposited in pdb data bank?
All the best,
Mehdi
-
Hi mehdi.
Look for inspiration here.
http://www.pymolwiki.org/index.php/Dynamic_mesh
fetch 1HWK, async=1
fetch 1HWK, 1hwk_map, type=2fofc, async=1
Best
Den 01/11/2012 18.09 skrev "Mehdi Talebzadeh Farooji" :
> Dear All,
>
> I am trying to create a electron density map for the pdb file which is
The electron density we usually display with an atomic model is based on
experimental diffraction data (usually x-ray). The purpose of the density map
is usually to validate the model, i.e. show it is consistent with the map
calculated using experimental data. Even for many structures that are at
t
