[PyMOL] Pymol, calculate enclosed volume of map

2012-09-16 Thread Ian Berke
Hi, I have a volumetric map from an EM reconstruction I loaded into pymol and contoured at 4sigma (it went through the normal statistical averaging and normalization in pymol). I'd like to calculate the volume enclosed by the 4sigma contour, so that I can calculate an estimated mass. Does anyone

[PyMOL] movie help, rotating around an objects own center of mass.

2012-09-16 Thread Jordan Willis
Hello, I'm making a movie, and I think I really got it down! However, I'm having trouble with independent rotations. I have nine independent objects, of which three I'm trying to get to rotate their own z-axis. Is this possible? Let me show you what I mean :) frame 30 rotate [0,0,1],360

[PyMOL] movie help, rotating around an objects own center of mass.

2012-09-16 Thread Jordan Willis
Hello, **First, I'd like to apologize if you are receiving this message more than once. I kept sending it from the wrong email name** I'm making a movie, and I think I really got it down! However, I'm having trouble with independent rotations. I have nine independent objects, of which three I