Hi Michael,
you need to reset the camera view.
def writeSurfaceValue(objname, wrlname='/tmp/tmp.wrl',
ptsname='/tmp/tmp.pts', pdbname='/tmp/tmp.pdb'):
cmd.hide('everything')
cmd.show('surface',objname)
view = cmd.get_view()
cmd.set_view([1.0, 0.0, 0.0, 0.0, 1.0, 0.0,
Hi Thomas,
if you load the molecules as "discrete" objects, then the states will be
independant and each state will have its own connectivity.
load testm.pqr, mov, discrete=1
PyMOL by default calculates connectivity based on distances. If you want
to make sure that only your own CONECT records
Thanks!
Apparently I'd forgotten that fetch defaults to doing a zoom (which it
obviously has to do to make things look reasonable), so I thought I didn't
need to play with the view. Too much non-PyMOL work rots the brain, it
seems.
Cheers,
-Michael
On Sun, Jul 15, 2012 at 5:35 AM, Thomas Holder
