Hi James,
the "beyond" operator yields true only if the considered atom pair
distance is beyond the threshold in ALL states. To remove atoms which
are beyond threshold in ANY state, try this:
python
for i in range(cmd.count_states()):
cmd.select('tmp', 'solvent beyond 5 of polymer', state=
Hi Pascal,
I don't think that PyMOL has an automatic renaming mode for those names.
But you can rename them manually:
alter name O1P, name="OP1"
alter name O2P, name="OP2"
http://pymolwiki.org/index.php/Alter
Cheers,
Thomas
Pascal Auffinger wrote, On 06/27/12 19:13:
> Hi,
>
> What is the
