Hi,
I want to make pymol show me clashes between residues vdw spheres only
if the clashes are above a certain clash cut off, say if the clashing
residues overlap by x square angstrom than its o.k, but if they
overlap by more then x it's should show as a clash.
Does anyone know of a way to do
Hi Doran,
there is a script on the PyMOLWiki that shows VDW clashes:
http://pymolwiki.org/index.php/Show_bumps
There are several sculpt_vdw_vis_* settings which control the visualization:
sculpt_vdw_vis_max
sculpt_vdw_vis_mid
sculpt_vdw_vis_min
Cheers,
Thomas
doran...@post.tau.ac.il wrote,
Hi Thomas,
is this a general purpose script or does it only work for proteins/amino acids?
Cheers,
Arne
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Dr. Arne Dieckmann
Houk Research Lab | University of California, Los Angeles
On May 20,
