Hi
This is not a pymol problem per se, but I'm trying to figure out
whether the error below is hardware-related (video card) or
software-related (i.e., video driver/mesa/opengl libraries, etc.). If
I run pymol from the command line (loading one of the demo files,
pept.r3d), the pymol graphics and i
Hi Julien,
how did you prepare the 2-state object?
If you like you can try to install "psico", it provides a quite robust
"morpheasy" command.
http://pymolwiki.org/index.php/Psico
Cheers,
Thomas
On 19.04.2012 19:43, Julien LV wrote:
> Hi,
>
> I'm trying to use rigimol for the first time.
>
Hi,
Red-cyan and red-blue anaglyphs are affected by the chromatic aberration
of our eyes. If I use PyMOL's anaglyph stereo and close one of my eyes,
the red image is blurrier than the other one. Also, most of the red color
is lost.
Nowadays there are better color combinations for anaglyphs:
Hi Luis,
We've had "optimized anaglyph" in PyMOL for a little while now. The
default mode is to attenuate intensities in the left and right eyes to
reduce strain and improve the 3D experience. If you have a recent
build (eg. after v1.5.0) try anaglyph. Versions before that don't have
the optimize
Hi Rolf,
The new code should fix this problem. Alternatively, put this in your
~/.pymolrc and see if it helps:
set use_shaders, 0
set sphere_mode, 0
Cheers,
-- Jason
On Fri, Apr 20, 2012 at 5:11 AM, Rolf S. Arvidson wrote:
> Hi
> This is not a pymol problem per se, but I'm trying to figure ou
Dear Jason,
Thanks for the tip about anaglyph_mode settings. I am using PyMOL version
1.5.0.3. However, I usually work with carbon atoms painted either black or
dark gray (over a light blue background). The optimized anaglyph setting
makes it hard to differentiate red oxygens from black carbo
