[PyMOL] accessing bp annotated as a palindrome.

In the 147bp nucleosome structure pdb1kx5 the DNA is a palindrome and numbering of the resi(dues) starts a the center bp (74), so -73 to +73. The central bp is numbered 0. Can someone tell me the command syntax to set the colors of the bps before the central bp, e.g., -50. commands such a

[PyMOL] Intel Video - Please Respond

Greetings, Due to the number of problems that arise when rendering on Intel video cards, we're going to automatically disable new rendering features if an Intel video card is detected. You will be able to use PyMOL, but with the older, slower, uglier rendering. Also, you can override this autodete

Re: [PyMOL] accessing bp annotated as a palindrome.

Hi Chuck, PyMOL assumes your residues identifiers will be non-negative. Bad assumption. PyMOL parses the string "-50" as the range "0-50". This should be filed as a bug on the open-source tracker. In the meantime, you will have to adjust all the identifiers in order to select. If -73 is the lowes

Re: [PyMOL] accessing bp annotated as a palindrome.

Hi Chuck & Jason, escaping the hyphen also works for me: color red, resi \-50 Cheers, Thomas Jason Vertrees wrote, On 04/05/12 14:37: > Hi Chuck, > > PyMOL assumes your residues identifiers will be non-negative. Bad > assumption. PyMOL parses the string "-50" as the range "0-50". This > sho

Re: [PyMOL] accessing bp annotated as a palindrome.

Thomas, Very clever. Chuck, you now have two options. Cheers, -- J On Thu, Apr 5, 2012 at 8:51 AM, Thomas Holder wrote: > Hi Chuck & Jason, > > escaping the hyphen also works for me: > > color red, resi \-50 > > Cheers, >  Thomas > > Jason Vertrees wrote, On 04/05/12 14:37: > >> Hi Chuck, >>

[PyMOL] save pdb with headers

Hi, There is an easy way to save a pdb adding custom headers using PyMol? Thanks. -- Better than sec? Nothing is better than sec when it comes to monitoring Big Data applications. Try Boundary one-second resolution app m