Hi Andreas,
I forgot one step, sorry. The update.py script does not copy the header
files from the include directory, so you need:
cd $VMD/plugins/include
cp vmdconio.h molfile_plugin.h $PYMOL/contrib/uiuc/plugins/include
Here I put $VMD and $PYMOL as the respective source tree roots.
Hopefull
Hi Anasuya,
your question is related to this one from September last year:
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg09588.html
In short (example with heme as ligand):
select ligand, chain A and resn HEM
select shortrange, byres (polymer within 4.5 of ligand)
select midran
I'm trying to understand the map_new command, especially the "gaussian" option.
What determines the shape of the gaussian function? What is the relationship
between the "b" factor and the variance (or the full-width-half-maxium) of the
gaussian? How is the map normalized?
What does the "grid" o
Dear Users,
I was putting together some movies using pymol and I have some
questions.
First, how can I gradually make a surface go from solid to transparent?
Currently what I see is, in scene 1 I have it solid (0% transp.)
surface. Then after I show some ligands and aa side chains in scene 2, I
Hi Yuri,
> I was putting together some movies using pymol and I have some
> questions.
> First, how can I gradually make a surface go from solid to transparent?
> Currently what I see is, in scene 1 I have it solid (0% transp.)
> surface. Then after I show some ligands and aa side chains in sce
