[PyMOL] Association of .pdb with PyMol

2011-12-28 Thread Jacob Keller
Dear List, I have v.1.41 running on windows 7 64 bit, and cannot associate .pdb files with pymol. The OS simply seems to ignore the association "choose default program," with no error message or anything, and also when I try to do same through the control panel. Any thoughts? Jacob -- *

Re: [PyMOL] Association of .pdb with PyMol

2011-12-28 Thread Jacob Keller
Dear List, I actually figured it out--I think the registry is not modified appropriately upon installation of a new version. I found the following advice online: "In regedit: Navigte to Computer\HKEY_CLASSES_ROOT\Applications and find your .exe name. Navigate under its name to shell>open>command.

Re: [PyMOL] Association of .pdb with PyMol

2011-12-28 Thread Edward A. Berry
Have you tried opening a dos window and: ftype pdbfile=C:\wherever\pymol.exe %1 assoc .pdb=pdbfile If that doesn't work you can make the associations directly in the registry, but its more complicated. Jacob Keller wrote: > Dear List, > > I have v.1.41 running on windows 7 64 bit, an

[PyMOL] rotate

2011-12-28 Thread Vivek Ranjan
Hello, I would like to rotate a group of atoms around an axis defined by line connecting two atoms in the group. Is it possible in Pymol ? How to do it ? -- Thank you and Regards, Vivek Ranjan -- Ridiculously easy VDI.

Re: [PyMOL] rotate

2011-12-28 Thread Jason Vertrees
Hi Vivek, Check out the "rotate" command (http://pymolwiki.org/index.php/Rotate). Cheers, -- Jason On Wed, Dec 28, 2011 at 1:58 PM, Vivek Ranjan wrote: > Hello, > > I would like to rotate a group of atoms around an axis defined by line > connecting two atoms in the group. Is it possible in Pym

Re: [PyMOL] rotate

2011-12-28 Thread Vivek Ranjan
Is it possible to define an arbitrary axis (say a line connecting two atoms). Thanks, Vivek On Wednesday, December 28, 2011, Jason Vertrees < jason.vertr...@schrodinger.com> wrote: > Hi Vivek, > > Check out the "rotate" command (http://pymolwiki.org/index.php/Rotate). > > Cheers, > > -- Jason >

Re: [PyMOL] rotate

2011-12-28 Thread Jason Vertrees
Vivek, Yes, it is. Please read the web page I suggested. Cheers, Jason Sent from my android. On Dec 28, 2011 9:04 PM, "Vivek Ranjan" wrote: > Is it possible to define an arbitrary axis (say a line connecting two > atoms). > > Thanks, > > Vivek > > On Wednesday, December 28, 2011, Jason Vertr