Re: [PyMOL] Installation PyMOL failure in Linux (CentOS)

2011-12-02 Thread Marius Retegan
Hello, The latest revision 3971 compiles without problems with gcc 4.5.1 on Fedora 14. I usually install all the dependencies with yum. My suggestion would be to try compiling with gcc4.5. Marius On Fri, Dec 2, 2011 at 8:19 AM, grantaka36 wrote: > Referring the following, I'm trying to install

Re: [PyMOL] Installation PyMOL failure in Linux (CentOS)

2011-12-02 Thread Troels Emtekær Linnet
Try Following this script. http://www.pymolwiki.org/index.php/Linux_Install#Ubuntu.2FMint_Compile_and_install_with_MPEG_support Please report if you are successful. It would be interesting to see how it works on CentOS /T 2011/12/2 grantaka36 > Referring the following, I'm trying to install

Re: [PyMOL] Installation PyMOL failure in Linux (CentOS)

2011-12-02 Thread Marius Retegan
Could you please specified what exactly did the gcc 4.5 broke in Pymol? Maybe this is not the case for every linux distribution. Cheers, Marius 2011/12/2 Troels Emtekær Linnet : > Try Following this script. > > http://www.pymolwiki.org/index.php/Linux_Install#Ubuntu.2FMint_Compile_and_install_wit

Re: [PyMOL] Installation PyMOL failure in Linux (CentOS)

2011-12-02 Thread Troels Emtekær Linnet
Hi Marius. The last test I had on a Ubuntu/Mint box (1 month ago), it would not compile with gcc 4.5. So, it is necessary to change to gcc 4.4 I have made a script that auto compile on Ubuntu/Mint. I have not checked the last release with hcc 4.5 I have not tried CentOS. It would be interesting t

Re: [PyMOL] Installation PyMOL failure in Linux (CentOS)

2011-12-02 Thread David Hall
the builds on https://build.opensuse.org/package/show?package=pymol&project=devel%3Alanguages%3Apython for opensuse 11.3 and 11.4 use gcc4.5 successfully. I blame ubuntu or linux mint. -David On Dec 2, 2011, at 10:21 AM, Marius Retegan wrote: > Could you please specified what exactly did the

Re: [PyMOL] change cartoon transparency for only a selection

2011-12-02 Thread Jason Vertrees
Hi Kristoffer, The key is to set "cartoon skip" on the cartoon to hide: #fetch a protein and make a copy fetch 1cll, async=0 create a_copy, 1cll # show them as cartoons set cartoon_transparency, 0.75, a_copy show_as cartoon # select the region of interest select to_hide, i. 103-111 orient