Hi everyone,
I'm quite new to Pymol and I hope that I don't ask something that has
been answered several times before, but I didn't find anything about
this topic that could solve my problem.
I've prepared a .pdb file containing one protein at different times in
the simulation. I'd like to prepar
Hi Alexander,
by default PyMOL recognized secondary structure as the minimum consensus
over all states. So if a residue is not recognized as helix or sheet in
_all_ states, it will be assigned as loop. You might be happy with this:
# type after loading the file
dss state=1
For detailed explana
Hi Thomas,
thank you very much for the answer, I'm beginning to understand the
actual problem now.
dss state=1
helps, but it changes the problem: I would like to see the secondary
structure that corresponds to the single snapshot. When I use dss
state=1, I just see the secondary structure of th
Hi Thomas, Troels and Alvin,
I appreciate your instant and detail advices to my problem, I got
succeeded - scripting in [C] enabled activate pymol in [S]. As Troels
says, I agree it's not pymol issue indeed, and sorry for contaminating
some questions to here list.
What is done:
laptop$ ssh -l (
Hi Alexander,
On Wed, 2011-10-26 12:53 EDT, Alexander Schulz
wrote:
> Hi Thomas,
>
> thank you very much for the answer, I'm beginning to understand the
> actual problem now.
>
> dss state=1
> helps, but it changes the problem: I would like to see the secondary
> structure that corresponds
