[PyMOL] Visualise molecules to scale?

Hi, I'm quite new to Pymol, but have searched and found nothing on how to visualise and draw a molecule to a certain scale. The reason I want to do this is to be able to output figures of several molecules separately in a format that displays their relative sizes. I can of course do this manua

Re: [PyMOL] Visualise molecules to scale?

Hi Daniel, grid_mode is your friend to display different molecules side by side and to scale. set grid_mode, on Andreas On 20/10/2011 9:51, Daniel Lundin wrote: > Hi, > > I'm quite new to Pymol, but have searched and found nothing on how to > visualise and draw a molecule to a certain scale

Re: [PyMOL] Visualise molecules to scale?

Thanks Andreas, 2011-10-20 11:07, Andreas Förster skrev: > Hi Daniel, > > grid_mode is your friend to display different molecules side by side and > to scale. > > set grid_mode, on > grid_mode looks useful, though I can't understand how to align the structures so that each ends up in the center o

Re: [PyMOL] Visualise molecules to scale?

Hi Daniel, If you need a scripted solution but not using grid mode, how about something like this from a freshly loaded PyMOL: # get the view matrix for the origin o = cmd.get_view() # fetch a protein fetch 1rx1, async=0 # get the position x = cmd.get_position() # restore the camera to the

Re: [PyMOL] Visualise molecules to scale?

Thanks Jason, 2011-10-20 14:01, Jason Vertrees skrev: > Hi Daniel, > > If you need a scripted solution but not using grid mode, how about > something like this from a freshly loaded PyMOL: > > # get the view matrix for the origin > o = cmd.get_view() > > # fetch a protein > fetch 1rx1, async=0 > >

Re: [PyMOL] Visualise molecules to scale?

Daniel, camera operations are done with move. To zoom out try 'move z, -10' Carsten -Original Message- From: Daniel Lundin [mailto:daniel.lun...@scilifelab.se] Sent: Thursday, October 20, 2011 8:20 AM To: Jason Vertrees Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Visualise

[PyMOL] pdb of ice

Hi all, Does anyone know of a pdb that was created for the structure of water molecules in ice? I have not been able to find one and am not looking forward to creating one! :) H. Adam Steinberg 7904 Bowman Rd Lodi, WI 53555 608/592-2366

Re: [PyMOL] pdb of ice

A quick google search found this: http://www.nyu.edu/pages/mathmol/library/water/ hope this helps _ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box 56 Dunedin 9054 New Zealand   Skype: jtyndall htt