Dear pymol users
how to show water molecules as ball and stick representation (O atom: ball
and H atoms: stick)?
any help will highly appreciated.
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Dear Leila,
stick_ball setting can only be applied to whole object and not atoms for all
I know.
So, to do ball (oxygen) and sticks (hydrogen) representations is :
show sticks, solvent
show spheres, solvent and e. O
set sphered_scale, 0.3, solvent and e. O
You can adjust the size of the sphere
Hello PyMOLers,
A quick question on the surface model, is there anywhere where I can learn
how molecules are color-coded. The default scheme has green, red, and bits
of yellow (I know the accessible to solvents surface is what is shown, but
I'm not sure what red, green, and yellow bits mean)? Also
Dear Spyros,
Do you know about the PyMOL wiki (http://pymolwiki.org/)?
Take a look here: http://pymolwiki.org/index.php/Color
for an explanation about colors.
In the default representation
Green: Carbon
Blue: Nitrogen
Red: Oxygen
Yellow: sulfur
For coloring eg.
>color gray
will color everything
