Re: [PyMOL] Logging the sculpt wizard

Hi Martin, I have a script that does almost exactly what you want (I guess). See attachment. Cheers, Thomas On Wed, Mar 23, 2011 at 11:19 PM, Martin Hediger wrote: > Dear List > I'm trying to automate the following sequence of steps in a PyMOL python > script: > 1. Start the mutagenesis wiza

Re: [PyMOL] How to get pymol 1.4

Hi Jason, many thanks for your reply and efforts. I hope you have a good time at the meetings. Keep up the good work !! cheers, Abhi On Wed, Mar 23, 2011 at 8:06 PM, Jason Vertrees < jason.vertr...@schrodinger.com> wrote: > Hi Stephen, > > > I would like to know if, and when, 1.4 will be avai

Re: [PyMOL] Logging the sculpt wizard

there was a bug in the script, sorry. Corrected script attached. Cheers, Thomas On Thu, Mar 24, 2011 at 8:40 AM, Thomas Holder wrote: > Hi Martin, > > I have a script that does almost exactly what you want (I guess). See > attachment. > > Cheers, >  Thomas -- Thomas Holder MPI for Developmen

Re: [PyMOL] PovRay

Hi Ian, As this may be of broader interest, I forward it to the pymol user list too. You can clip the scene using an intersection. Let's say that you have the object you want to clip stored as a povray include file "object.inc". Then you can get the clipped object as: //### pymol_object = union

[PyMOL] MacPyMOL 1.4 on OS X 10.5.8 load command error

Hi Jason et al, We just added PyMOL 1.4 to our software environment, and it looks like Numpy doesn't want to run on 10.5.8 machines: PyMOL>import numpy Traceback (most recent call last): File "/programs/m/pymol/1.4/MacPyMOL.app/pymol/modules/pymol/parser.py", line 260, in parse exec(layer.

Re: [PyMOL] Reminder: Fourth annual CCP4 summer school in USA, at APS, June 7-15

Dear Colleagues, This is a reminder that the deadline for applications for the 4th annual CCP4 summer school "From data collection to structure refinement and beyond" is April 8. The school will take place June 7-15, 2011 at the Advanced Photon Source (APS) near Chicago. There is no registr

Re: [PyMOL] MacPyMOL 1.4 on OS X 10.5.8 load command error

Hi Ben, Thanks for finding this. A colleague looked into this and says it's fixable. So, we'll have a fix out soon. This is a 10.5-specific numpy issue. Our update release is planned to follow soon to clear up a few small issues. Cheers, -- Jason On Thu, Mar 24, 2011 at 3:42 PM, Ben Eisenbr