Roberto,
partial answer to point 3. Adding a "_" before an object name hides it
from the panel.
For points 1 or 2. Could you please expand on your question? Is this for
interactive
or scripted mode?
For scripted mode you could modify the coordinates of the pseudoatom to
be closer to the target
Hi Carsten,
thanks for the answer.
Yes is for scripted mode.
I searched pyMOLWiki for a simple command to move the label to the target
(something like 'super', 'fit' ) but I didn't find.
So I searched for 'get' to have the coordinates of the target atom and for
'alter' to change the coordina
Hi Francios,
Someone recently asked about this and the answer was that this should
be a setting, but isn't currently available. If I have time, I'll try
to sneak this in the upcoming PyMOL v1.4 release.
Cheers,
-- Jason
On Fri, Feb 25, 2011 at 3:05 AM, Francois Berenger wrote:
> Hello,
>
> Is
Hi Roberto,
It's nice to see people learning how to script and putting PyMOL
through its paces.
> trying to use a pseudoatom as label I met several problems:
>
> 1) How to move the label (pseudoatom) to a target residue?
> Is there a simple command to do?
The easiest way would be to get t
Jason Vertrees wrote:
> Hi Francios,
>
> Someone recently asked about this and the answer was that this should
> be a setting, but isn't currently available. If I have time, I'll try
> to sneak this in the upcoming PyMOL v1.4 release.
Please, send me an e-mail if it is done some day.
Other soft
Hi Kanika,
Let's say your protein is called 'protein'. Then you can obtain the other
unit corresponding to your second biomt operation as:
create unit2, protein
alter_state 1,unit2,(y,z)=(-y,40.6-z)
Note this is a shorthand specific to your case. For a full biomt record (R
t), with R being the r
Iv applied the foll eq:
load 1b8e.pdb, A
create B,A
alter_state 1,B,(x,y,z)=(x,-y,40.60-z)
it should form a dimer of my protein but the object "B" is same as my
monomer with no change... i am unable to find the error..
On Mon, Feb 28, 2011 at 12:39 PM, Tsjerk Wassenaar wrote:
> Hi Kanika,
>
>
Hi Kanika,
'b' is a selection keyword. For that reason it doesn't make a good
object identifier. Try
load 1b8e.pdb, 1b8e_A
create 1b8e_B,1b8e_A
alter_state 1,1b8e_B,(x,y,z)=(-x,y,33.43-/z)
Not that the numbers are different. In 1b8e.pdb I find:
REMARK 350 BIOMT1 1 1.00 0.00 0.000
M really sorry for the wrong information guys...script helped a lot..
If my protein is a dimer...Chain A,BHow can i apply the script
here?i dun know for 2 chains
Thank you..in advanceapologies for previous mistake...
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BI
