Hello,
I clipped a part of a protein by a slab, by manual, graphical
inspection. Now I want to select the slab and store the clipped atoms as
new molecule (pdb file), in order to sum up the accessible surface area
previously computed by an external program. Unfortunately I didn't find
hints, e
Wataru, just a thought: Have you looked into the gamma setting in pymol?
Setting gamma to 4.0 from 1.0 and raytracing reproduces the washed out effect.
> -Original Message-
> From: Wataru Kagawa [mailto:wkag...@aoni.waseda.jp]
> Sent: Tuesday, February 22, 2011 7:19 PM
> To: Michael Ler
Hello pymol users,
I apologize if this posting is not appropriate for the pymol user list.
If there is a better place to direct these questions please let me know.
I have installed the vasco plugin into pymol on my mac by:
"python setup_vasco_x.py install" in the Vasco modules directory. I hav
Hi Johannes,
PyMOL's awareness of and capabilities surrounding clipping planes does
not allow this functionality. Improving clipping planes is a higher
priority, so I hope to have this updated in the near future.
Having said this, you can however, can get the clipping information
from PyMOL and
