Thanks for the reply (and the welcome). With your suggestion I can get a
raytraced image.
Is there a way to get a normal/OpenGL image staying in batch mode? All
those shades are quite disturbing,
since real molecules don't have a shade! :-)
On 02/18/2011 04:52 PM, Tsjerk Wassenaar wrote:
> Hi
Hi John,
You don't actually need to ray trace before saying any more. That was
an older "feature".
Here's what worked for me:
# save this to examply.py
from pymol import cmd
cmd.load(sys.argv[1])
cmd.hide()
cmd.show("spheres")
cmd.set('sphere_scale',0.3)
cmd.set('orthoscopic',1)
cmd.png("print
Hi,
your program looks exactly like mine, but I don't get the
png image if I don't raytrace it before. I think everything
else is working because if I run interectively the molecule
is loaded properly, and by just adding the cmd.ray command
gives me a correct image (but raytraced).
I'm running ver
Hi John,
> I'm running version Version 1.2r2.
This is probably why. I don't recall the exact version in which this
became doable, but it's now available in the latest version.
Cheers,
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(
Thanks,
it seems that Ubuntu has a quite updated pymol version in its repositories.
I will install a new version by hand.
John
On 02/18/2011 05:43 PM, Jason Vertrees wrote:
> Hi John,
>
>> I'm running version Version 1.2r2.
> This is probably why. I don't recall the exact version in which th
Hi Bradley,
if your group is named "mygroup", then do the following:
print cmd.get_object_list('(mygroup)')
Cheers,
Thomas
On Wed, Feb 16, 2011 at 12:19 AM, Bradley Hintze
wrote:
> Hi all,
> I know that you can get ALL pymol object names by running cmd.get_names()
> but if you have objects i
