Looking at the code around fetch, it seems pymol makes an assumption
that has annoyed me in many other pieces of software, that there is
only one biological assembly in the pdb. Lots of proteins have 2 or
more. I think I've even seen one with 6.
The second biological assembly has an extension of
Hi David,
You're right. It's fixed now. I'll check the code in later today.
PyMOL understands the types better now and it even works across the
wwPDB servers. The PDB id "3by0" is a good test case; it has pdb,
biounits and density data.
Test out the new code with:
# let's fetch from Nihon.
se
Fetching different biological units is cool. But can I query the pdb
through PyMOL to see what biological units are associated with a pdb?
(Could look it up directly, but I like one-stop shopping.)
Thanks.
Andreas
On Fri, Aug 6, 2010 at 4:14 PM, Jason Vertrees
wrote:
> Hi David,
>
> You're
Hallo
Thanks for the answer. So could PyMol generate the connectivity it sees?
So this could be used for a subsequent force field computation?
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