[PyMOL] mset, cmd or objects, cut-off distance for interactions in a morph

2010-07-12 Thread kuettner
Dear all, is there a way to specifically enable or disable objects during a movie? The command mv_cmd (rTools?) seems not work (e.g. mv_cmd 37,enable measure01). As you might guess I would like to disable or enable bonding distances in a morphing video. Does someone knows are more elegant way

[PyMOL] No module Error in running pymol

2010-07-12 Thread rituraj purohit
Dear friends I am having Ubuntu 10.04 and want to use pymol. There is no error in installation but it is giving following error during running pymol "r...@ritu-laptop:~$ pymol Traceback (most recent call last): File "", line 1, in ImportError: No module named pymol /usr/local/bin/python2.6: No

[PyMOL] python

2010-07-12 Thread Vivek Ranjan
Hello, How can I find out what version of python my current installation of pymol is using ? -- Thank you and Regards, Vivek Ranjan -- This SF.net email is sponsored by Sprint What will you do first with EVO, the first

Re: [PyMOL] No module Error in running pymol

2010-07-12 Thread Robert Campbell
Hi Rituraj, On Mon, 12 Jul 2010 17:43:02 +0530 rituraj purohit wrote: > Dear friends > > I am having Ubuntu 10.04 and want to use pymol. > There is no error in installation but it is giving following error > during running pymol > > "r...@ritu-laptop:~$ pymol > Traceback (most recent call last

Re: [PyMOL] python

2010-07-12 Thread Schubert, Carsten [PRDUS]
import sys print sys.version > -Original Message- > From: Vivek Ranjan [mailto:vran...@gmail.com] > Sent: Monday, July 12, 2010 10:37 AM > To: Pymol > Subject: [PyMOL] python > > Hello, > > How can I find out what version of python my current installation of > pymol is using ? > > -- >

Re: [PyMOL] python

2010-07-12 Thread Robert Campbell
On Mon, 12 Jul 2010 10:37:07 -0400 Vivek Ranjan wrote: > Hello, > > How can I find out what version of python my current installation of > pymol is using ? One way is simply to type "python" in a terminal window and you should see something like: Python 2.6.5+ (release26-maint, Jul 1 2010, 00

Re: [PyMOL] how to run a python script

2010-07-12 Thread Paul Rigor (uci-ics)
Hi, Your assumptions are correct, as I've copied and tested your code, which works fine from the current working directory where I ran the pymol start script. It's probably a quirk w/ your installation? Otherwise, you can just specify the full path to your script or "cd" into the folder... either

[PyMOL] pymol fetch

2010-07-12 Thread Vivek Ranjan
Hello, There is a script supercell at "http://pymolwiki.org/index.php/Supercell";. It uses the following example: run supercell.py fetch 2x19, async=0 Where is "2x19"... I mean the pdb file for this example is in which directory under pymol ? -- Thank you and Regards, Vivek Ranjan -

Re: [PyMOL] pymol fetch

2010-07-12 Thread Justin Lecher
On 12/07/10 20:24, Vivek Ranjan wrote: > Hello, > > There is a script supercell at > "http://pymolwiki.org/index.php/Supercell";. It uses the following > example: > > run supercell.py > fetch 2x19, async=0 > > Where is "2x19"... I mean the pdb file for this example is in which > directory under

Re: [PyMOL] Question on how to identify residue number on protein surface

2010-07-12 Thread Jason Vertrees
Hi Jay Song, Why not use code that's already available? Check out http://pymolwiki.org/index.php/FindSurfaceResidues. Cheers, -- Jason 2010/7/12 SongJianHui : > Hi all, > > I am trying using PyMol to identify the residue numbers on a protein > surface. I have been thinking use a low efficient