[PyMOL] Install the software

2010-07-06 Thread José Ignacio Sánchez Gallego
Hi!! I am very new in this stuff, and my first problem it's how to install the software. I want to use it online. I go to the main page http://www.pymol.org/ and then to · OPEN SOURCE CODE (SVN), then I download the GNU tarball, but then I don't know how to install it or what I have to do to st

Re: [PyMOL] Install the software

2010-07-06 Thread Hugo Gutierrez de Teran
Ignacio, Go to the README and INSTALL files within the tar (which you must uncompress of course) to follow compilation instrucions. More information in: http://pymolwiki.org/index.php/Category:Installation Deppending on the platform that you are running (linux(mac/windows). Suerte, Hugo José I

Re: [PyMOL] Install the software

2010-07-06 Thread José Ignacio Sánchez Gallego
Thanks Hugo, I am going to try it. Muchas gracias, Saludos De: Hugo Gutierrez de Teran [hugo.te...@usc.es] Enviado el: martes, 06 de julio de 2010 15:55 Para: José Ignacio Sánchez Gallego CC: pymol-users@lists.sourceforge.net Asunto: Re: [PyMOL] Install the

Re: [PyMOL] color an isosurface

2010-07-06 Thread Jason Vertrees
Hi all, To clearly state what Marius is intimating: we can calculate any property of atoms and color the surface based on that property. His example uses ELF. We created the surface from one map, and colored it from another. While his application is very specific, PyMOL will allow you to color

[PyMOL] Calculating % secondary structure

2010-07-06 Thread Prija Ponnan
Hello Can we calculate percentage secondary structural element using Pymol or please suggest me some other program for this purpose Prija -- Prija Ponnan -- This SF.net email is sponsored by Sprint What will you do first