[PyMOL] Autodock Plugin Problem

Dear all, I have a problem running autodock 4 using autodock plugin in pymol. The pymol automatically shut down once I run the autogrid. I read the webpage saying that I have to turn the feature off by setting the environmental variable to ADPLUGIN_NO_OUTPUT_REDIRECT I am not very famili

Re: [PyMOL] Segmentation fault r3910 on linux with Python 2.5/2.6 and tcl/tk 8.5.5 and 8.6b1.

Hi, Sorry, this was not compiled properly! catchsegv showed that tcl/tk 8.6 was being used. Setting LD_LIBRARY_PATH for the alternative tcl/tk libraries for the Python and PyMOL compilation fixed the problem. The segfault is gone when using Python 2.5.5 with tcl/tk 8.5. It also works with Pyth

[PyMOL] stereo issue on OS X 10.6.3 with PyMOL 1.2r3

Howdy PyMOLers, Has anyone else had issues with quad-buffered stereo on OS X 10.6.3? My user is seeing strange artifacting in MacPyMOL 1.2r3. An example is here: http://developer.sbgrid.org/~bene/files/macpymol-stereo.jpg The odd thing is that when she uses the standard OS X screenshot tool t

[PyMOL] Autodock/vina plugin: Generate receptor problem (no module named OS)

Dear All, I am using Autodock/vina plugin for pymol in Mac (Snow leopard). I have installed autodock4, autogrid4, MGL tools 1.5.4, vina and pymol 2.1. I was able to install autodock/vina plugin successfully on Mac. But while using autodock/vina plugin on pymol, I got stucked at the stage of 'Ge