[PyMOL] Calcium radius

2010-03-15 Thread Raluca Mihaela ANDREI
Hi! I have a pdb file that contains Calmodulin protein with Calcium ions. I want to calculate the surface. Does anyone know which is the radius of Calcium in PyMOL library and were I can find this libray? Thank you, Raluca -

Re: [PyMOL] PyMOL on the Mac

2010-03-15 Thread Jason Vertrees
David, You may remember writing: > A Pymol Quicklook plugin. My primary purpose would be for pses, but you > might as well pick up pdbs and other formats supported by pymol along the way. > For pdb files, I wouldn't want the default pymol view of lines colored by > atom with green carbons bein

Re: [PyMOL] PyMOL on the Mac

2010-03-15 Thread Tsjerk Wassenaar
Hi Jason, Along those lines, would it be possible to have a 'default' which can be set to a list of settings related to appearance? That might be more concise than to have everything in a separate setting. set default,[cartoon, lines, nonbonded, cbaw] The default value as pymol starts up now wou