Re: [PyMOL] Pymol Align Command and RMSD Calculation ?

2009-10-25 Thread Warren DeLano
> 1. What type of RMSD is calculated with align comman i.e All Atoms or only Backbone? It depends on the input selections. If you don't restrict it to backbone atoms, PyMOL will perform the fit for all matched atoms. Also, it is important to understand that "align" is a combined sequence and

[PyMOL] Regarding Object Find

2009-10-25 Thread Suneel Kumar Bommisetty
Dear All, I am looking for script for "object find" In pymol. I have a sd file contains 20 molecules. I have loaded into pymol. If I want visualize next molecule, I need to press Play or forward or disply - sequence function. Is there any script to/load/select/highlight specific molecule from on