Hello,
Is there a way to perform secondary structure matching with Pymol. I
already tried the align function with different selections without any
success but the 2 proteins obviously share the same fold with low sequence
identity.
I know it can be done in other software like Coot but I'd like to
I normally use this command with that purpose:
align obj1&(ss h)&name ca, obj2&(ss h)&name ca
That is, obj2 is structurally aligned onto obj1 on the basis the CA
trace on the regions where secondary structure matches alfa helix (ss h)
Hugo
Kerff Frédéric wrote:
> Hello,
>
> Is there a way to per
Fred,
You might try "super" instead of align (same syntax).
Failing that, you can use "pair_fit" with explicit selections -- just make sure
the number of atoms is the same in each of the selections.
Cheers,
Warren
> -Original Message-
> From: Kerff Frédéric [mailto:fke...@ulg.ac.be]
>
Here's a crazy idea: if someone out there were clever at both python
and manipulating orientation matrices, I would bet that a "scene" could
be quartered or cut into eighths and "translated" such that each portion
filled the viewport for rendering; then the individual images could be
spliced bac
