Hi PyMOL Users,
I was wondering if there was a smart way of having a script iterate over all
(or some) of the states. I know that there are the usual iterate and
iterate_state commands available but it appears that it makes for clumsier
code. More specifically, I'm looking to use the pucker.
Dear Joachim,
you don't say whether its Linux, Windows or Mac OS X and which emitter
and glasses you are using. I've seen this behaviour long time ago with
very old Nvidia graphics card drivers under Linux. Sometimes, I still
see this behaviour with new drivers but with old computer hardwar
I said, we are on Linux.
But I did not say:
We are using Stereographic glases and emiter connected by 3-wire cable
to the DIN plug on NVIDIA Quadro FX 3000
NVIDIA GLX Module 173.14.17 Mon Feb 23 16:04:17 PST 2009
If of interest, this is openSUSE 11.1 on i386
Am 28.09.2009 16:21, schrieb Dir
Am 28.09.2009 um 16:25 schrieb Joachim Reichelt:
I said, we are on Linux.
Uups, yes, you are right - may fault. But you may try the new driver
installation and the minizing/maximizing, anyway.
Good luck,
Dirk.
But I did not say:
We are using Stereographic glases and emiter connecte
I agree with Dirk - this is likely a hardware problem. From within
PyMOL ,it can be worked around via the menu Display->Stereo->Swap Sides
or by typing "st sw" (stereo swap) at the command line.
Cheers,
Warren
From: Dirk Kostrewa [mailto:kostr...@genzentr
Sean,
I'm not sure what you have in mind other than something like (python code):
for state in cmd.count_states():
cmd.iterate_state(state, selection, expression)
where expression is accumulating coordinates from multiple states
Cheers,
Warren
From
I think I figured it out (though, it wasn't documented). What I needed was to
use:
cmd.get_model(selection, STATE)
I think that's the correct usage? What I needed was to loop through a
selection and then to calculate the sugar pucker information. However, not all
atoms from the selection a
Sean,
Yes, that is an alternate route. cmd.get_model is likely slower than
cmd.iterate_state, but should work regardless.
Cheers
Warren
From: Sean Law [mailto:magic...@hotmail.com]
Sent: Monday, September 28, 2009 11:58 AM
To: pymol-users@lists.sourc
