Re: [PyMOL] Unequal sizes of spheres - how?

2009-08-27 Thread Mark Wehner
Hi Andy, hi everyone, if you only want a few water molecules in a different size you can always change the size by altering their van-der-Waals radii. For example, if you want to change water number 3: alter r. hoh & i. 3, vdw=vdw+3 The CA atoms could be changed similarly, but if you want to c

[PyMOL] APBS in pymol1.2

2009-08-27 Thread Hugo G. de Teran
Hi, I am trying to use APBS in pymol v1.2 (x86_64 linux compilation). I have compiled with no problem APBS, but when I try to start a calculation I get the following error: File "/usr/local/lib64/python2.6/site-packages/pmg_tk/startup/apbs_tools.py", line 998, in __init__ from freemol import

Re: [PyMOL] APBS in pymol1.2

2009-08-27 Thread Warren DeLano
Hugo, If building PyMOL from source, then please get APBS in source or binary form from the APBS sourceforge project: http://apbs.sourceforge.net Cheers, Warren > -Original Message- > From: Hugo G. de Teran [mailto:hugo.te...@usc.es] > Sent: Thursday, August 27, 2009 10:06 AM > Cc: a