Hello,
does anyone know, which Quadro card supports the Zalman mode.
The readme states:
Stereo options 7, 8, and 9 are only supported on G8xGL and higher GPUs.
Mode 7 is for the Zalman
--
Joachim
--
Let Crystal Reports
Hello people,
I'm trying to use pymol from a custom python scrypt. What I have done
is to align two structures, but I need get the RMS value from that
align but I have no idea how to do it.
I tried to use the RMS command but the value differs from the value
that I get from the align.
Any Idea ho
Hello Warren, all,
I've been working on a plugin for PyMOLX11Hybrid, in which I have a few
lines of code such as:
cmd.alter_state(1, copy, "x,y,z = sym_partner([x,y,z],
stored.tmpOp)")
AND
cmd.alter_state(1, object, "x,y,z =
cell_shift_helper([x,y,z],stored.shift)")
Both those fun
Hello Stuart,
By default, alter_state expressions are evaluated in the "pymol"
namespace of the current PyMOL instance, not the "cmd" (pymol.cmd)
namespace. The reason why it works with 'run' is that run also executes
in "pymol" by default, and thus, includes any functions you define.
Try:
Hello Warren,
When adding in the "cmd." I get these error messages:
Traceback (most recent call last):
File "", line 1, in
AttributeError: 'module' object has no attribute 'sym_partner'
Traceback (most recent call last):
File "", line 1, in
AttributeError: 'module' object has no attribute
Stuart,
Hmm...whoops, my mistake. Cmd.extend doesn't actually add a function to
the cmd module -- only to the command keyword dictionary.
So, instead, set it explicitly in your .py file:
from pymol import cmd
def my_fn(...):
cmd.my_fn = my_fn
# then later on, in the menu, etc.
Joachim,
I think this is more an issue of driver support rather than hardware.
However, the latest drivers do not necessarily support older cards.
Please see nVidia's site for details:
http://www.nvidia.com/Download/index.aspx?lang=en-us
and click on the "supported hardware" tab after searching.
Carlos,
The complication is that align outputs RMS values for only those atomic pairs
remaining following sequence matching following by a refined structure
alignment (which omits atoms above a cutoff), whereas rms outputs the value for
all atoms matched by identifier (without any optimization)
