The autodock plugin written by Daniel Seeliger ceased to function (load) when I
upgraded to Pymol 1.2r1.
Although it is not compatible directly with Autodock 4, it did have the useful
functionality of
presenting an autodock 'box' that was readily tweakable, so that the parameters
could be expo
Jed,
With the 1.2 release of PyMOL, we have completely switched over to
Numpy. So the first thing to try is to replace:
from Numeric import *
# with
from numpy import *
Cheers,
Warren
> -Original Message-
> From: Jed Goldstone [mailto:jedg...@mit.edu]
> Sent: Thursday, August 13, 200
Hi All,
Does anyone know of a program that can extract the amino sequence of a
protein from a PDB file and output it as a FASTA file?
Thanks! and all the best,
--Buz
--
Let Crystal Reports handle the reporting - Fre
Buz,
# Yep, PyMOL 1.2:
load $TUT/1hpv.pdb
save 1hpv.fasta
# or by selection
save 1hpv_A.fasta, chain A
# etc.
Cheers
Warren
> -Original Message-
> From: Buz Barstow [mailto:b...@mac.com]
> Sent: Thursday, August 13, 2009 2:39 PM
> To: pymol-users@lists.sourceforge.net; ccp...@jiscm
You can also download the sequence directly from the pdb
J
_
Joel Tyndall, PhD
Senior Lecturer in Medicinal Chemistry
National School of Pharmacy
University of Otago
PO Box 56 Dunedin 9054
New Zealand
http://www.researcherid.com/rid/C-2803-200
I was wondering if AxPyMOL could handle a .pse file that loaded two pdb
structures in powerpoint.
I've simply created a .pse file by fetching 2bmv and 2hhb. Then I loaded this
onto my PC laptop while in powerpoint. Other slides in the same presentation
with a single pdb file works fine. How
